TSS: Rfhg 77789.1: Difference between revisions

Revision as of 02:16, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_77789.1
Species:	human
Chr:	chr6

Start:	10412606
End:	10412617
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3811931,EH38E2445036)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF331522:114 MA567099:114
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TFAP2A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-220
Nearest PromoterID:	NM_001032280
Entrez ID:	7020
Nearest Unigene:	Hs.519880
Nearest Refseq:	NM_003220
Nearest Ensembl:	ENSG00000137203
Gene Name:	TFAP2A
Gene Alias:	AP-2\|AP-2alpha\|AP2TF\|BOFS\|TFAP2
Gene Type:	protein-coding
CpG%:	0.090909
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000137203
 |nearest_promoter_id=NM_001032280
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=10412606