TSS: Rfhg 8139.1: Difference between revisions

Revision as of 03:22, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_8139.1
TSS ID(Version3):	hg_3506.1
Species:	human
Chr:	chr1

Start:	74198212
End:	74198300
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

12

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2183506,EH38E1359223)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000557284.7:0 ENST00000467578.7:0 ENST00000524915.5:0 ENST00000370894.9:0 ENST00000370899.7:0 ENST00000482102.2:0 ENST00000370898.9:0 ENST00000370895.5:0 ENST00000529485.5:0 ENST00000534632.5:0 ENST00000533006.1:0 ENST00000648585.1:0 ENST00000370893.1:0 ENST00000534056.5:0 BC020720:0 AK294948:0 AF017445:0 AK304490:0 BC032865:0 AK223254:0 BC032308:0 AB208941:0 BX640903:0 AK299468:0 KU178439:0 KU178440:0 KU178441:0
GeneID:	100526835 8790
HGNC/MGI_ID:	HGNC:3825 HGNC:42952
UniProt_ID:	A0A0S2Z4P4 A0A0S2Z4Z3 A0A0S2Z5C6 A0A3B3ITB1 A0PJA8 A6NHC7 B4DH62 E9PK10 E9PKE1 E9PMK0 E9PMM4 O14772 Q53FM8 V9GXZ4
Nearer transcript ids and distances:

Gene_name:	FPGT-TNNI3K
Gene_symbol:	FPGT FPGT-TNNI3K
Gene_synonyms:	GFPP
Gene_source:	HGNC:3825 HGNC:42952

TATA-Box annotation

Distance to TSS:	44
Nearest PromoterID:	NM_001199327
Entrez ID:	100526835
Nearest Unigene:	Hs.480085
Nearest Refseq:	NM_001112808
Nearest Ensembl:	ENSG00000259030
Gene Name:	FPGT-TNNI3K
Gene Alias:	CARK\|TNNI3K
Gene Type:	protein-coding
CpG%:	0.090909
GC%:	0.719101
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:3825 HGNC:42952
+|methods=CAGE{{!}}TSS_database{{!}}NETCAGE{{!}}C1CAGE{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}oligo_capping
 |nearest_ensembl=ENSG00000259030
 |nearest_promoter_id=NM_001199327
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891
 |species=human
 |start=74198212
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000557284.7 ENST00000467578.7 ENST00000524915.5 ENST00000370894.9 ENST00000370899.7 ENST00000482102.2 ENST00000370898.9 ENST00000370895.5 ENST00000529485.5 ENST00000534632.5 ENST00000533006.1 ENST00000648585.1 ENST00000370893.1 ENST00000534056.5 BC020720 AK294948 AF017445 AK304490 BC032865 AK223254 BC032308 AB208941 BX640903 AK299468 KU178439 KU178440 KU178441
+|tss_cluster_detected=12
 |tss_id=rfhg_8139.1
 |tss_id_v3=hg_3506.1