TSS: Rfhg 86069.1: Difference between revisions

Revision as of 04:49, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_86069.1
Species:	human
Chr:	chr6

Start:	110415540
End:	110415579
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000368923.8:0 ENST00000479373.1:0 ENST00000368924.9:0 BC032786:0 AK293029:0
GeneID:	8528
HGNC/MGI_ID:	HGNC:2727
UniProt_ID:	C9K4X7 F2Z2E0 Q99489
Nearer transcript ids and distances:

Gene_name:	DDO
Gene_symbol:	DDO
Gene_synonyms:	DASOX DASPO
Gene_source:	HGNC:2727

TATA-Box annotation

Distance to TSS:	16
Nearest PromoterID:	NM_001368173
Entrez ID:	8528
Nearest Unigene:	Hs.591348
Nearest Refseq:	NM_003649
Nearest Ensembl:	ENSG00000203797
Gene Name:	DDO
Gene Alias:	DASOX\|DDO-1\|DDO-2
Gene Type:	protein-coding
CpG%:	0.025641
GC%:	0.475000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:2727
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000203797
 |nearest_promoter_id=NM_001368173
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=110415540