TSS: Hg 102074.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=65 |entrez_id=58493 |gc_percent=0.686567 |gene_alias=C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 |gene_description=INTS3 and NABP...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HSPC043= | |||
|MISE= | |||
|SOSSC= | |||
|SSBIP1= | |||
|all_trans=ENST00000497712.6:0 ENST00000481146.6:0 ENST00000374234.1:0 ENST00000476599.2:0 NM_021218:0 uc064vcp.1:0 uc064vcr.1:0 uc064vcs.1:0 uc064vct.1:0 BC014881:0 AK000637:0 BC065210:0 AF161409:0 AF161411:0 AK310007:0 ENST00000374236.5:-4 uc064vcq.1:-4 ENST00000374242.8:-91 uc004bgg.4:-91 | |||
|chr=chr9 | |||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=0 | |||
|distance_to_tss=65 | |distance_to_tss=65 | ||
|end=112718145 | |||
|entrez_id=58493 | |entrez_id=58493 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 | |gene_alias=C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 | ||
|gene_description=INTS3 and NABP interacting protein | |gene_description=INTS3 and NABP interacting protein | ||
|gene_name=INIP | |gene_id=58493 | ||
|gene_name=INTS3 and NABP interacting protein | |||
|gene_source=HGNC:24994 | |||
|gene_symbol=INIP | |||
|gene_synonyms=HSPC043 MISE SOSS-C hSSBIP1 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hSSBIP1= | |||
|hgnc_mgi_id=HGNC:24994 | |||
|nearest_ensembl=ENSG00000148153 | |nearest_ensembl=ENSG00000148153 | ||
|nearest_promoter_id=NM_001329590 | |nearest_promoter_id=NM_001329590 | ||
|nearest_refseq=NM_021218 | |nearest_refseq=NM_021218 | ||
|nearest_unigene=Hs.658575 | |nearest_unigene=Hs.658575 | ||
|num_trans=19 | |||
|species=human | |||
|start=112718023 | |||
|strand=- | |||
|tata_box="43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00)" | |tata_box="43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00)" | ||
|transcript_name=ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 NM_021218 uc064vcp.1 uc064vcr.1 uc064vcs.1 uc064vct.1 BC014881 AK000637 BC065210 AF161409 AF161411 AK310007 | |||
|tss_classification=yes | |||
|tss_id=hg_102074.1 | |tss_id=hg_102074.1 | ||
|tss_score=1 | |||
|uniprot_id=Q5VWJ6 Q9NRY2 | |||
}} | }} | ||
Revision as of 19:10, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 65 |
|---|---|
| Nearest PromoterID: | NM_001329590 |
| Entrez ID: | 58493 |
| Nearest Unigene: | Hs.658575 |
| Nearest Refseq: | NM_021218 |
| Nearest Ensembl: | ENSG00000148153 |
| Gene Name: | INTS3 and NABP interacting protein |
| Gene Alias: | C9orf80 |
| Gene Description: | INTS3 and NABP interacting protein |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "43(CCCTTTAAGAGC,+,0.00),43(CCCTTTAAGAGC,-,0.00),44(CCTTTAAGAGCA,+,0.00)" |
TSS expression
Expression data not found.