TSS: Rfhg 87370.1: Difference between revisions

Revision as of 05:14, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_87370.1
Species:	human
Chr:	chr6

Start:	132734758
End:	132734771
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3901877,EH38E2504107)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000367927.9:0 ENST00000425515.6:0 ENST00000392393.7:0 ENST00000674148.1:0 ENST00000450865.2:0 ENST00000448644.2:0 AK075110:0 AK314708:0
GeneID:	55350
HGNC/MGI_ID:	HGNC:16431
UniProt_ID:	F5GYI1 Q9NY84
Nearer transcript ids and distances:

Gene_name:	VNN3
Gene_symbol:	VNN3P
Gene_synonyms:	HSA238982
Gene_source:	HGNC:16431

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NM_001368151
Entrez ID:	55350
Nearest Unigene:	Hs.183656
Nearest Refseq:	NM_018399
Nearest Ensembl:
Gene Name:	VNN3
Gene Alias:	HSA238982
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.214286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:16431
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=
 |nearest_promoter_id=NM_001368151
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=132734758