TSS: Rfhg 93657.1: Difference between revisions

Revision as of 07:09, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_93657.1
Species:	human
Chr:	chr7

Start:	38359121
End:	38359136
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3968046,EH38E2549768)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000390346.2:-26 BC071739:-26
GeneID:	6976
HGNC/MGI_ID:	HGNC:12288
UniProt_ID:	P03979
Nearer transcript ids and distances:

Gene_name:	TRG-AS1
Gene_symbol:	TRGV3
Gene_synonyms:	V1S3
Gene_source:	HGNC:12288

TATA-Box annotation

Distance to TSS:	17551
Nearest PromoterID:	NR_040085
Entrez ID:	100506776
Nearest Unigene:	Hs.173034
Nearest Refseq:	NR_040085
Nearest Ensembl:	ENSG00000281103
Gene Name:	TRG-AS1
Gene Alias:	TCRGV
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:12288
+|methods=CAGE
 |nearest_ensembl=ENSG00000281103
 |nearest_promoter_id=NR_040085
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=38359121