TSS: Rfhg 96405.1: Difference between revisions

Revision as of 07:58, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_96405.1
Species:	human
Chr:	chr7

Start:	91880787
End:	91880827
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4001699,EH38E2571190)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000668948.1:0
GeneID:	112267986
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MTERF1
Gene_symbol:	LOC112267986
Gene_synonyms:
Gene_source:	EntrezGene:112267986

TATA-Box annotation

Distance to TSS:	-105
Nearest PromoterID:	NM_001301135
Entrez ID:	7978
Nearest Unigene:	Hs.532216
Nearest Refseq:	NM_006980
Nearest Ensembl:	ENSG00000127989
Gene Name:	MTERF1
Gene Alias:	MTERF
Gene Type:	protein-coding
CpG%:	0.125000
GC%:	0.731707
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000127989
 |nearest_promoter_id=NM_001301135
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=91880787