TSS: Hg 102085.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=1884 |entrez_id=1318 |gc_percent=0.432836 |gene_alias=COPT2|CTR2|hCTR2 |gene_description=solute carrier family 31 member 2 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
|CTR2= | |||
|all_trans=DQ582274:-91 | |||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=-91 | |||
|distance_to_tss=1884 | |distance_to_tss=1884 | ||
|end=113152843 | |||
|entrez_id=1318 | |entrez_id=1318 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| Line 8: | Line 13: | ||
|gene_name=SLC31A2 | |gene_name=SLC31A2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hCTR2= | |||
|nearest_ensembl=ENSG00000136867 | |nearest_ensembl=ENSG00000136867 | ||
|nearest_promoter_id=NM_001860 | |nearest_promoter_id=NM_001860 | ||
|nearest_refseq=NM_001860 | |nearest_refseq=NM_001860 | ||
|nearest_unigene=Hs.24030 | |nearest_unigene=Hs.24030 | ||
|num_trans=1 | |||
|species=human | |||
|start=113152840 | |||
|strand=- | |||
|transcript_name=DQ582274 | |||
|tss_classification=no | |||
|tss_id=hg_102085.1 | |tss_id=hg_102085.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:11, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1884 |
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| Nearest PromoterID: | NM_001860 |
| Entrez ID: | 1318 |
| Nearest Unigene: | Hs.24030 |
| Nearest Refseq: | NM_001860 |
| Nearest Ensembl: | ENSG00000136867 |
| Gene Name: | SLC31A2 |
| Gene Alias: | COPT2 |
| Gene Description: | solute carrier family 31 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |