TSS: Rfhg 98022.1: Difference between revisions

Revision as of 08:28, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_98022.1
Species:	human
Chr:	chr7

Start:	102671766
End:	102671766
Strand:	-

Source datasets

PRJNA597322

Protocol

STRIPE-seq

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4010313,EH38E2577339)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC086857:37
GeneID:	246721
HGNC/MGI_ID:	HGNC:23208
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	POLR2J2
Gene_symbol:	POLR2J2
Gene_synonyms:	RPB11b1
Gene_source:	HGNC:23208

TATA-Box annotation

Distance to TSS:	-31
Nearest PromoterID:	NM_032959
Entrez ID:	246721
Nearest Unigene:	Hs.610255
Nearest Refseq:	NM_032958
Nearest Ensembl:	ENSG00000267645
Gene Name:	POLR2J2
Gene Alias:	HRPB11B\|POLR2J3\|RPB11b1\|RPB11b2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:23208
+|methods=STRIPE-seq
 |nearest_ensembl=ENSG00000267645
 |nearest_promoter_id=NM_032959
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA597322
 |species=human
 |start=102671766