TSS: Rfhg 9858.1: Difference between revisions

Revision as of 08:38, 9 December 2023

Basic information about the TSS

TSS ID:	rfhg_9858.1
Species:	human
Chr:	chr1

Start:	99264444
End:	99264446
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2202626,EH38E1371088)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AB384482:3 BC148348:3
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PLPPR4
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	153
Nearest PromoterID:	NM_014839
Entrez ID:	9890
Nearest Unigene:	Hs.13245
Nearest Refseq:	NM_014839
Nearest Ensembl:	ENSG00000117600
Gene Name:	PLPPR4
Gene Alias:	LPPR4\|LPR4\|PHP1\|PRG-1\|PRG1
Gene Type:	protein-coding
CpG%:	0.500000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000117600
 |nearest_promoter_id=NM_014839
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=99264444