TSS: Rfmm 100633.1: Difference between revisions

Revision as of 20:26, 21 December 2023

Basic information about the TSS

TSS ID:	rfmm_100633.1
Species:	mouse
Chr:	chr10

Start:	122912273
End:	122912296
Strand:	-

Source datasets

DRA000914|GSE117655

Protocol

CAGE_and_CAGEscan|deepCAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2345714,EM10E0966155)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000219203.2:0 AK161217:0
GeneID:	67074
HGNC/MGI_ID:	MGI:1914324
UniProt_ID:	A0A1W2P878 Q3TTT0
Nearer transcript ids and distances:

Gene_name:	Mon2
Gene_symbol:	Mon2
Gene_synonyms:	2610528O22Rik SF21
Gene_source:	MGI:1914324

TATA-Box annotation

Distance to TSS:	126
Nearest PromoterID:	NM_153395.2
Entrez ID:	Mon2
Nearest Unigene:	XM_017314065
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Mon2
Gene Alias:
Gene Type:
CpG%:	0.130435
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:1914324
+|methods=CAGE_and_CAGEscan{{!}}deepCAGE
 |nearest_ensembl=
 |nearest_promoter_id=NM_153395.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=DRA000914{{!}}GSE117655
 |species=mouse
 |start=122912273
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000219203.2 AK161217
-|tss_cluster_detected=5
+|tss_cluster_detected=2
 |tss_id=rfmm_100633.1
 |tss_score=1
 |uniprot_id=A0A1W2P878 Q3TTT0
 }}