TSS: Rfmm 115440.1: Difference between revisions

Revision as of 00:31, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_115440.1
Species:	mouse
Chr:	chr12

Start:	18564444
End:	18564447
Strand:	+

Source datasets

DRA000914

Protocol

CAGE_and_CAGEscan

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D1284615,EM10E0532298)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000177778.9:64 AK017753:64
GeneID:	236366
HGNC/MGI_ID:	MGI:1917882
UniProt_ID:	J3QPX0
Nearer transcript ids and distances:

Gene_name:	5730507C01Rik
Gene_symbol:	5730507C01Rik
Gene_synonyms:
Gene_source:	MGI:1917882

TATA-Box annotation

Distance to TSS:	4
Nearest PromoterID:	XM_011243861.3
Entrez ID:	5730507C01Rik
Nearest Unigene:	XM_011243861
Nearest Refseq:
Nearest Ensembl:
Gene Name:	5730507C01Rik
Gene Alias:
Gene Type:
CpG%:	0.333333
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:1917882
+|methods=CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=XM_011243861.3
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=DRA000914
 |species=mouse
 |start=18564444