TSS: Rfmm 125001.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 21: | Line 21: | ||
|gene_type= | |gene_type= | ||
|hgnc_mgi_id=MGI:1913753 | |hgnc_mgi_id=MGI:1913753 | ||
|methods=CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_045798.1 | |nearest_promoter_id=NR_045798.1 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=mouse | |species=mouse | ||
|start=64396464 | |start=64396464 | ||
Revision as of 03:05, 22 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2443623,EM10E1009124) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -38 |
|---|---|
| Nearest PromoterID: | NR_045798.1 |
| Entrez ID: | 1810034E14Rik |
| Nearest Unigene: | NR_045798 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | 1810034E14Rik |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.080000 |
| GC%: | 0.576923 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.