TSS: Rfmm 133952.1: Difference between revisions

Latest revision as of 05:29, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_133952.1
Species:	mouse
Chr:	chr14

Start:	119175338
End:	119175404
Strand:	+

Source datasets

PRJDB10397|GSE117655|DRA000914

Protocol

C1CAGE|deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2485901,EM10E1024715)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENSMUST00000022734.9 AK146097 AK148270 BC013766 U28423
Distance:	0
GeneID:	100037258
HGNC/MGI_ID:	MGI:107373
UniProt_ID:	Q3UFV9 Q3UKA1

Gene_name:	Dnajc3
Gene_symbol:	Dnajc3
Gene_synonyms:	Dnajc3 Dnajc3a Dnajc3b Prkri mp58 p58IPK
Gene_source:	MGI:107373

TATA-Box annotation

Distance to TSS:	27
Nearest PromoterID:	NM_008929.3
Entrez ID:	Dnajc3
Nearest Unigene:	NM_008929
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Dnajc3
Gene Alias:
Gene Description:
Gene Type:
CpG%:	0.181818
GC%:	0.776119
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:107373
+|methods=C1CAGE{{!}}deepCAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_008929.3
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB10397{{!}}GSE117655{{!}}DRA000914
 |species=mouse
 |start=119175338
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000022734.9 AK146097 AK148270 BC013766 U28423
-|tss_cluster_detected=7
+|tss_cluster_detected=3
 |tss_id=rfmm_133952.1
 |tss_score=1
 |uniprot_id=Q3UFV9 Q3UKA1
 }}