TSS: Rfmm 147922.1: Difference between revisions

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|gene_type=
|gene_type=
|hgnc_mgi_id=MGI:3810125
|hgnc_mgi_id=MGI:3810125
|methods=CAGE_and_CAGEscan
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=XM_006523371.5
|nearest_promoter_id=XM_006523371.5
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|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=DRA000914
|species=mouse
|species=mouse
|start=15230686
|start=15230686

Revision as of 09:19, 22 December 2023

Basic information about the TSS

TSS ID:rfmm_147922.1
Species:mouse
Chr:chr17
Start:15230686
End:15230698
Strand:+
Source datasetsDRA000914
ProtocolCAGE_and_CAGEscan
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:BC065801:-86
GeneID:100041621
HGNC/MGI_ID:MGI:3810125
UniProt_ID:Q6P064
Nearer transcript ids and distances:
    Gene_name:Gm3435
    Gene_symbol:Gm3435
    Gene_synonyms:
    Gene_source:MGI:3810125



    TATA-Box annotation

    Distance to TSS:-49
    Nearest PromoterID:XM_006523371.5
    Entrez ID:Gm3435
    Nearest Unigene:XR_004939452
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Gm3435
    Gene Alias:
    Gene Type:
    CpG%:0.000000
    GC%:0.846154
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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