TSS: Rfmm 151856.1: Difference between revisions

Revision as of 10:24, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_151856.1
Species:	mouse
Chr:	chr17

Start:	40158525
End:	40158525
Strand:	+

Source datasets

GSE117655

Protocol

deepCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AY194859:37
GeneID:	387239
HGNC/MGI_ID:	MGI:2676865
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Rn18s-rs5
Gene_symbol:	Mir199b
Gene_synonyms:	Mirn199b mmu-mir-199b
Gene_source:	MGI:2676865

TATA-Box annotation

Distance to TSS:	1280
Nearest PromoterID:	Rn18s-rs5
Entrez ID:	Rn18s-rs5
Nearest Unigene:	Rn18s-rs5
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Rn18s-rs5
Gene Alias:
Gene Type:	NA
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=NA
 |hgnc_mgi_id=MGI:2676865
+|methods=deepCAGE
 |nearest_ensembl=
 |nearest_promoter_id=Rn18s-rs5
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=GSE117655
 |species=mouse
 |start=40158525