TSS: Hg 102140.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=13129 |entrez_id=85301 |gc_percent=0.542289 |gene_alias=STLS |gene_description=collagen type XXVII alpha 1 chain |gene_name=COL2...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance= | |||
|distance_to_tss=13129 | |distance_to_tss=13129 | ||
|end=114168675 | |||
|entrez_id=85301 | |entrez_id=85301 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NM_032161 | |nearest_refseq=NM_032161 | ||
|nearest_unigene=Hs.494892 | |nearest_unigene=Hs.494892 | ||
|num_trans=0 | |||
|species=human | |||
|start=114168672 | |||
|strand=- | |||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_102140.1 | |tss_id=hg_102140.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:13, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 13129 |
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| Nearest PromoterID: | NM_032888 |
| Entrez ID: | 85301 |
| Nearest Unigene: | Hs.494892 |
| Nearest Refseq: | NM_032161 |
| Nearest Ensembl: | ENSG00000196739 |
| Gene Name: | COL27A1 |
| Gene Alias: | STLS |
| Gene Description: | collagen type XXVII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |