TSS: Rfmm 156170.1: Difference between revisions

Revision as of 11:35, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_156170.1
Species:	mouse
Chr:	chr18

Start:	13107476
End:	13107494
Strand:	+

Source datasets

FANTOM5|DRA000914

Protocol

CAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	dELS (EM10D2578242,EM10E1063389)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001357396.1:23
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	Impact
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-32
Nearest PromoterID:	NM_001357396.1
Entrez ID:	Impact
Nearest Unigene:	XM_011246850
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Impact
Gene Alias:
Gene Type:
CpG%:	0.055556
GC%:	0.526316
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=
+|methods=CAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_001357396.1
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DRA000914
 |species=mouse
 |start=13107476