TSS: Rfmm 1989.1: Difference between revisions
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|gene_type= | |gene_type= | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE{{!}}CAGE_and_CAGEscan | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NM_025283.3 | |nearest_promoter_id=NM_025283.3 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914 | |||
|species=mouse | |species=mouse | ||
|start=55170143 | |start=55170143 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name= | |transcript_name= | ||
|tss_cluster_detected=2 | |||
|tss_id=rfmm_1989.1 | |tss_id=rfmm_1989.1 | ||
|tss_id_v3=mm_5921.1 | |tss_id_v3=mm_5921.1 | ||
Revision as of 16:42, 22 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914 | |||||||||||||||
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| Protocol | CAGE|CAGE_and_CAGEscan | |||||||||||||||
| TSS cluster detected* | 2 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 5)
cCREs annotation
| Description: | PLS,CTCF-bound (EM10D2272308,EM10E0935870) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -189 |
|---|---|
| Nearest PromoterID: | NM_025283.3 |
| Entrez ID: | Mob4 |
| Nearest Unigene: | NM_001310585 |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | Mob4 |
| Gene Alias: | |
| Gene Type: | |
| CpG%: | 0.075862 |
| GC%: | 0.630137 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |