TSS: Rfmm 23176.1: Difference between revisions

Revision as of 17:36, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_23176.1
Species:	mouse
Chr:	chr2

Start:	167503435
End:	167503511
Strand:	-

Source datasets

GSE117655|DRA000914

Protocol

deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2674124,EM10E1103347)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000006587.7:0 ENSMUST00000125874.2:0 AK151326:0 AK170042:0 BC002270:0 AK088196:0 AK151705:0
GeneID:	407243
HGNC/MGI_ID:	MGI:2142624
UniProt_ID:	Q99LQ7
Nearer transcript ids and distances:

Gene_name:	Tmem189
Gene_symbol:	Peds1
Gene_synonyms:	Tmem189
Gene_source:	MGI:2142624

TATA-Box annotation

Distance to TSS:	-9
Nearest PromoterID:	NM_145538.2
Entrez ID:	Tmem189
Nearest Unigene:	NM_145538
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Tmem189
Gene Alias:
Gene Type:
CpG%:	0.210526
GC%:	0.792208
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:2142624
+|methods=deepCAGE{{!}}CAGE_and_CAGEscan
 |nearest_ensembl=
 |nearest_promoter_id=NM_145538.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=GSE117655{{!}}DRA000914
 |species=mouse
 |start=167503435
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000006587.7 ENSMUST00000125874.2 AK151326 AK170042 BC002270 AK088196 AK151705
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfmm_23176.1
 |tss_score=1
 |uniprot_id=Q99LQ7
 }}