TSS: Rfmm 37611.1: Difference between revisions

Revision as of 21:34, 22 December 2023

Basic information about the TSS

TSS ID:	rfmm_37611.1
Species:	mouse
Chr:	chr4

Start:	115797121
End:	115797125
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2746915,EM10E1130711)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000124071.9:0 ENSMUST00000084338.7:0 AK141654:0
GeneID:	140477
HGNC/MGI_ID:	MGI:2153518
UniProt_ID:	Q91ZK4
Nearer transcript ids and distances:

Gene_name:	Dmbx1
Gene_symbol:	Dmbx1
Gene_synonyms:	Atx Cdmx Dmbx1 Mbx Otx3
Gene_source:	MGI:2153518

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_130865.3
Entrez ID:	Dmbx1
Nearest Unigene:	NM_001025567
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Dmbx1
Gene Alias:
Gene Type:
CpG%:	0.250000
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:2153518
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=
 |nearest_promoter_id=NM_130865.3
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=mouse
 |start=115797121