TSS: Hg 102214.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=89223 |entrez_id=3371 |gc_percent=0.343284 |gene_alias=150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C |gene_description=tenascin C |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
|DFNA56= | |||
|GMEM= | |||
|GP= | |||
|HXB= | |||
|JI= | |||
|TN= | |||
|TN-C= | |||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance= | |||
|distance_to_tss=89223 | |distance_to_tss=89223 | ||
|end=115029035 | |||
|entrez_id=3371 | |entrez_id=3371 | ||
|gc_percent=0.343284 | |gc_percent=0.343284 | ||
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|nearest_refseq=NM_002160 | |nearest_refseq=NM_002160 | ||
|nearest_unigene=Hs.143250 | |nearest_unigene=Hs.143250 | ||
|num_trans=0 | |||
|species=human | |||
|start=115029033 | |||
|strand=- | |||
|tata_box="23(GTGTTTAAAGGG,-,0.00)" | |tata_box="23(GTGTTTAAAGGG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102214.1 | |tss_id=hg_102214.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:16, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 89223 |
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| Nearest PromoterID: | NM_002160 |
| Entrez ID: | 3371 |
| Nearest Unigene: | Hs.143250 |
| Nearest Refseq: | NM_002160 |
| Nearest Ensembl: | ENSG00000041982 |
| Gene Name: | TNC |
| Gene Alias: | 150-225 |
| Gene Description: | tenascin C |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.343284 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "23(GTGTTTAAAGGG,-,0.00)" |