TSS: Rfmm 76437.1: Difference between revisions

Revision as of 08:12, 23 December 2023

Basic information about the TSS

TSS ID:	rfmm_76437.1
TSS ID(Version3):	mm_70635.1
Species:	mouse
Chr:	chr8

Start:	13919674
End:	13919769
Strand:	+

Source datasets

FANTOM5|EPD|DRA000914|PRJDB10397|GSE117655

Protocol

CAGE|TSS_database|CAGE_and_CAGEscan|C1CAGE|deepCAGE

TSS cluster detected^*

5

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS,CTCF-bound (EM10D2900492,EM10E1197764)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000128557.3:0 AK132164:0 AK170835:0 AK139963:0 AK133990:0 BC028991:0 AK129444:0
GeneID:	101994
HGNC/MGI_ID:	MGI:1196398
UniProt_ID:	Q8K327
Nearer transcript ids and distances:

Gene_name:	Champ1
Gene_symbol:	Champ1
Gene_synonyms:	D8Ertd457e D8Ertd569e Zfp828
Gene_source:	MGI:1196398

TATA-Box annotation

Distance to TSS:	80
Nearest PromoterID:	NM_181854.2
Entrez ID:	Champ1
Nearest Unigene:	NM_181854
Nearest Refseq:
Nearest Ensembl:
Gene Name:	Champ1
Gene Alias:
Gene Type:
CpG%:	0.126316
GC%:	0.708333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=
 |hgnc_mgi_id=MGI:1196398
+|methods=CAGE{{!}}TSS_database{{!}}CAGE_and_CAGEscan{{!}}C1CAGE{{!}}deepCAGE
 |nearest_ensembl=
 |nearest_promoter_id=NM_181854.2
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJDB10397{{!}}GSE117655
 |species=mouse
 |start=13919674
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENSMUST00000128557.3 AK132164 AK170835 AK139963 AK133990 BC028991 AK129444
-|tss_cluster_detected=7
+|tss_cluster_detected=5
 |tss_id=rfmm_76437.1
 |tss_id_v3=mm_70635.1