TSS: Rfmm 8455.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 21: Line 21:
|gene_type=
|gene_type=
|hgnc_mgi_id=MGI:1925508
|hgnc_mgi_id=MGI:1925508
|methods=CAGE{{!}}TSS_database
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NM_030071.1
|nearest_promoter_id=NM_030071.1
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}EPD
|species=mouse
|species=mouse
|start=162913213
|start=162913213

Revision as of 10:24, 23 December 2023

Basic information about the TSS

TSS ID:rfmm_8455.1
Species:mouse
Chr:chr1
Start:162913213
End:162913243
Strand:-
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENSMUST00000096608.5:0
AK019544:0
GeneID:78258
HGNC/MGI_ID:MGI:1925508
UniProt_ID:G5E8L9 Q9D2J9
Nearer transcript ids and distances:
    Gene_name:Mroh9
    Gene_symbol:Mroh9
    Gene_synonyms:4921528O07Rik Armc11
    Gene_source:MGI:1925508



    TATA-Box annotation

    Distance to TSS:11
    Nearest PromoterID:NM_030071.1
    Entrez ID:Mroh9
    Nearest Unigene:NM_030071
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Mroh9
    Gene Alias:
    Gene Type:
    CpG%:0.000000
    GC%:0.451613
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfmm_8455.1&oldid=3138512"