TSS: Rfhg 10008.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000656060.1:0 ENST00000654574.1:0 ENST00000664684.1:0 ENST00000453011.5:0 ENST00000454721.6:0 ENST00000656047.1:0 ENST00000654544.1:0 ENST00000655226.1:0 ENST00000659528.1:0 ENST00000656671.1:0 ENST00000658370.1:0 ENST00000666646.1:0 BX538249:0 ENST00000663958.1:-1 ENST00000446527.5:4 NR_109849.1:-5 ENST00000451213.2:-7 ENST00000669687.1:36 ENST00000656224.1:124
|annotation=promoter-TSS (NR_109849)
|annotation=promoter-TSS (NR_109849)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_109849
|nearest_promoter_id=NR_109849
|nearest_refseq=NR_109849
|nearest_refseq=NR_109849
|nearest_transcripts=ENST00000663958.1:-1 ENST00000446527.5:4 NR_109849.1:-5 ENST00000451213.2:-7 ENST00000669687.1:36 ENST00000656224.1:124
|nearest_unigene=Hs.593669
|nearest_unigene=Hs.593669
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=BX538249
|transcript_name=ENST00000656060.1 ENST00000654574.1 ENST00000664684.1 ENST00000453011.5 ENST00000454721.6 ENST00000656047.1 ENST00000654544.1 ENST00000655226.1 ENST00000659528.1 ENST00000656671.1 ENST00000658370.1 ENST00000666646.1 BX538249
|tss_cluster_detected=10
|tss_cluster_detected=10
|tss_id=rfhg_10008.1
|tss_id=rfhg_10008.1

Revision as of 15:02, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_10008.1
Species:human
Chr:chr1
Start:101025851
End:101025915
Strand:+
Source datasetsPRJNA597322|PRJNA401781|PRJNA4843412|PRJNA615891|DRA013844
|PRJNA548673|PRJDB5282
ProtocolSTRIPE-seq|CAGE|RAMPAGE|NETCAGE|SLIC_CAGE|oligo_capping
|ReCappable-seq|C1CAGE
TSS cluster detected*10

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2204050,EH38E1372062)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000656060.1:0
ENST00000654574.1:0
ENST00000664684.1:0
ENST00000453011.5:0
ENST00000454721.6:0
ENST00000656047.1:0
ENST00000654544.1:0
ENST00000655226.1:0
ENST00000659528.1:0
ENST00000656671.1:0
ENST00000658370.1:0
ENST00000666646.1:0
BX538249:0
GeneID:102606465
HGNC/MGI_ID:HGNC:53720
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000663958.1:-1
  • ENST00000446527.5:4
  • NR_109849.1:-5
  • ENST00000451213.2:-7
  • ENST00000669687.1:36
  • ENST00000656224.1:124
view more...
Gene_name:LOC102606465
Gene_symbol:DPH5-DT
Gene_synonyms:
Gene_source:HGNC:53720



TATA-Box annotation

Distance to TSS:37
Nearest PromoterID:NR_109849
Entrez ID:102606465
Nearest Unigene:Hs.593669
Nearest Refseq:NR_109849
Nearest Ensembl:
Gene Name:LOC102606465
Gene Alias:-
Gene Type:ncRNA
CpG%:0.078125
GC%:0.723077
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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