TSS: Rfhg 100106.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000425248.5:0 NM_012133.6:0 NM_001290033.2:0 AF157833:0 AF207598:0 AK291409:0 HM005552:-3 LF384090:-3 MA619667:-3 ENST00000330992.8:5 BC110796:5 AB047847:42 AK022934:55 BC017443:59
|annotation=promoter-TSS (NM_012133)
|annotation=promoter-TSS (NM_012133)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_012133
|nearest_promoter_id=NM_012133
|nearest_refseq=NM_012133
|nearest_refseq=NM_012133
|nearest_transcripts=HM005552:-3 LF384090:-3 MA619667:-3 ENST00000330992.8:5 BC110796:5 AB047847:42 AK022934:55 BC017443:59
|nearest_unigene=Hs.6421
|nearest_unigene=Hs.6421
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000425248.5 AF157833 AF207598 AK291409
|transcript_name=ENST00000425248.5 NM_012133.6 NM_001290033.2 AF157833 AF207598 AK291409
|tss_cluster_detected=13
|tss_cluster_detected=13
|tss_id=rfhg_100106.1
|tss_id=rfhg_100106.1

Revision as of 15:03, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_100106.1
TSS ID(Version3):hg_86162.1
Species:human
Chr:chr7
Start:130668710
End:130668755
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|PRJNA4843412|DRA013844|PRJNA401781
|PRJNA597322|PRJNA615891|PRJDB5282|PRJNA548673
ProtocolCAGE|TSS_database|NETCAGE|oligo_capping|STRIPE-seq|RAMPAGE
|SLIC_CAGE|C1CAGE|ReCappable-seq
TSS cluster detected*13

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4030940,EH38E2590525)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000425248.5:0
NM_012133.6:0
NM_001290033.2:0
AF157833:0
AF207598:0
AK291409:0
GeneID:26958
HGNC/MGI_ID:HGNC:2237
UniProt_ID:A0A140VK12
Nearer transcript ids and distances:
  • HM005552:-3
  • LF384090:-3
  • MA619667:-3
  • ENST00000330992.8:5
  • BC110796:5
  • AB047847:42
  • AK022934:55
  • BC017443:59
view more...
Gene_name:COPG2
Gene_symbol:COPG2
Gene_synonyms:2-COP
Gene_source:HGNC:2237



TATA-Box annotation

Distance to TSS:16
Nearest PromoterID:NM_012133
Entrez ID:26958
Nearest Unigene:Hs.6421
Nearest Refseq:NM_012133
Nearest Ensembl:ENSG00000158623
Gene Name:COPG2
Gene Alias:2-COP|gamma-2-COP
Gene Type:protein-coding
CpG%:0.133333
GC%:0.782609
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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