TSS: Rfhg 10022.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF211927:-11 MA447504:-11 LF206314:500 MA441891:500
|annotation=promoter-TSS (NM_001400)
|annotation=promoter-TSS (NM_001400)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NR_104626
|nearest_promoter_id=NR_104626
|nearest_refseq=NR_104626
|nearest_refseq=NR_104626
|nearest_transcripts=LF206314:500 MA441891:500
|nearest_unigene=Hs.534209
|nearest_unigene=Hs.534209
|peak_score=1
|peak_score=1

Revision as of 15:06, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_10022.1
Species:human
Chr:chr1
Start:101236226
End:101236239
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2204247,EH38E1372217)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF211927:-11
MA447504:-11
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF206314:500
  • MA441891:500
view more...
Gene_name:LOC101928370
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:296
Nearest PromoterID:NR_104626
Entrez ID:101928370
Nearest Unigene:Hs.534209
Nearest Refseq:NR_104626
Nearest Ensembl:
Gene Name:LOC101928370
Gene Alias:-
Gene Type:ncRNA
CpG%:0.153846
GC%:0.642857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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