TSS: Rfhg 101186.1: Difference between revisions

Revision as of 15:46, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_101186.1
Species:	human
Chr:	chr7

Start:	142384059
End:	142384069
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4040938,EH38E2597379)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	X74843:215
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	AB305850:256 AB749853:263 AB749917:282 AB306248:285 X58329:310 X04934:310 AB306214:331 AB306217:487 view more...

Gene_name:	MIR11400
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-90463
Nearest PromoterID:	NR_162121
Entrez ID:	113839523
Nearest Unigene:
Nearest Refseq:	NR_162121
Nearest Ensembl:
Gene Name:	MIR11400
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=X74843:215 AB305850:256 AB749853:263 AB749917:282 AB306248:285 X58329:310 X04934:310 AB306214:331 AB306217:487
 |annotation=Intergenic
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_162121
 |nearest_refseq=NR_162121
+|nearest_transcripts=AB305850:256 AB749853:263 AB749917:282 AB306248:285 X58329:310 X04934:310 AB306214:331 AB306217:487
 |nearest_unigene=
 |peak_score=1