TSS: Rfhg 10124.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=N
|ccre_category=N
Line 25: Line 26:
|nearest_promoter_id=NR_033990
|nearest_promoter_id=NR_033990
|nearest_refseq=NR_033990
|nearest_refseq=NR_033990
|nearest_transcripts=
|nearest_unigene=Hs.514487
|nearest_unigene=Hs.514487
|peak_score=1
|peak_score=1

Revision as of 15:47, 6 November 2024

Basic information about the TSS


TSS ID:rfhg_10124.1
Species:human
Chr:chr1
Start:104068321
End:104068345
Strand:+
Source datasetsPRJNA4843412
ProtocolNETCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LOC100129138
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-4690
    Nearest PromoterID:NR_033990
    Entrez ID:100129138
    Nearest Unigene:Hs.514487
    Nearest Refseq:NR_033990
    Nearest Ensembl:ENSG00000215869
    Gene Name:LOC100129138
    Gene Alias:-
    Gene Type:pseudo
    CpG%:0.000000
    GC%:0.440000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):