TSS: Rfhg 10138.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=N
|ccre_category=N
Line 25: Line 26:
|nearest_promoter_id=NR_146609
|nearest_promoter_id=NR_146609
|nearest_refseq=NR_146609
|nearest_refseq=NR_146609
|nearest_transcripts=
|nearest_unigene=Hs.568533
|nearest_unigene=Hs.568533
|peak_score=1
|peak_score=1

Revision as of 15:50, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_10138.1
Species:human
Chr:chr1
Start:106219103
End:106219119
Strand:+
Source datasetsDBTSS
ProtocolTSS-seq
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LINC01677
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:-190858
    Nearest PromoterID:NR_146609
    Entrez ID:105378884
    Nearest Unigene:Hs.568533
    Nearest Refseq:NR_146609
    Nearest Ensembl:
    Gene Name:LINC01677
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.000000
    GC%:0.117647
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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