TSS: Rfhg 101436.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000390416.1:0 LP896471:0 L77708:0 KM004774:0 M28598:0 D50773:0 X04923:-19 Z48302:-48 AB076754:99 AB076755:99 AF117135:100 D32023:100 AF088736:100 AB076771:101 AB076799:101 AF088701:101 KM004327:102 D32018:103 AF395792:103 D50747:103 AF088778:103 D50764:103 FJ571144:103 AF088700:104 AF088759:105 AF088680:107 KM004770:108 AF327021:-127 M12424:-129 AF045804:-133 AJ305364:-133 AB076773:-136 AF045808:-136 AJ305361:-136 Z77836:-136 AF088767:-137 AF045807:-137 AJ305360:-137 JQ778260:-137 D32019:-138 D50743:-138 AF179357:-140 D32038:-140 AF088702:-140 AB076761:-141 AB076794:-141 AF088703:-141 AF045802:-141 AJ305362:-141 D50769:-142 JQ778264:-142 X01410:-150 AF088780:201 AB076757:218 AB076788:218 AB076789:218 AB076791:219 D50767:219 AB076765:220 AB076792:221 M28597:221 AF088742:221 LT626065:-310 L77713:-419 AF088749:-419 KM004279:-420 AB076785:-424 D50755:-424 AB044123:-425 AB076767:-425 AB076782:-425 L77728:-425 AF088705:-425 D50762:-425 AF088730:-427 AF088726:-428 AB044117:-430 AB076752:-430 D50744:-431 AB044135:433 AF088694:434 AF088699:435 AF088748:435 AF117139:436 D50742:436 AF088766:436 AB044113:437 AB076759:437 L77720:437 L77724:437 S80931:437 D50746:437 AF088740:437 U07134:438 D50745:438 AF088698:438 AF088755:438 AF088776:438 AF088797:438 D50763:438 M12426:438 D50752:439 AF088697:439 AF088746:439 AF088764:439 D50748:440 AF088719:440 AF088733:440 AF088744:440 AF088745:440 AF088774:440 D50772:440 AF088696:441 AF088738:441 AF088787:441 AF088791:441 D50751:442 AF088695:442 AF088758:442 D21848:442 AF088772:443 AF088795:443
|annotation=intron (NM_001130026, intron 10 of 10)
|annotation=intron (NM_001130026, intron 10 of 10)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NM_002770
|nearest_promoter_id=NM_002770
|nearest_refseq=NM_002770
|nearest_refseq=NM_002770
|nearest_transcripts=X04923:-19 Z48302:-48 AB076754:99 AB076755:99 AF117135:100 D32023:100 AF088736:100 AB076771:101 AB076799:101 AF088701:101 KM004327:102 D32018:103 AF395792:103 D50747:103 AF088778:103 D50764:103 FJ571144:103 AF088700:104 AF088759:105 AF088680:107 KM004770:108 AF327021:-127 M12424:-129 AF045804:-133 AJ305364:-133 AB076773:-136 AF045808:-136 AJ305361:-136 Z77836:-136 AF088767:-137 AF045807:-137 AJ305360:-137 JQ778260:-137 D32019:-138 D50743:-138 AF179357:-140 D32038:-140 AF088702:-140 AB076761:-141 AB076794:-141 AF088703:-141 AF045802:-141 AJ305362:-141 D50769:-142 JQ778264:-142 X01410:-150 AF088780:201 AB076757:218 AB076788:218 AB076789:218 AB076791:219 D50767:219 AB076765:220 AB076792:221 M28597:221 AF088742:221 LT626065:-310 L77713:-419 AF088749:-419 KM004279:-420 AB076785:-424 D50755:-424 AB044123:-425 AB076767:-425 AB076782:-425 L77728:-425 AF088705:-425 D50762:-425 AF088730:-427 AF088726:-428 AB044117:-430 AB076752:-430 D50744:-431 AB044135:433 AF088694:434 AF088699:435 AF088748:435 AF117139:436 D50742:436 AF088766:436 AB044113:437 AB076759:437 L77720:437 L77724:437 S80931:437 D50746:437 AF088740:437 U07134:438 D50745:438 AF088698:438 AF088755:438 AF088776:438 AF088797:438 D50763:438 M12426:438 D50752:439 AF088697:439 AF088746:439 AF088764:439 D50748:440 AF088719:440 AF088733:440 AF088744:440 AF088745:440 AF088774:440 D50772:440 AF088696:441 AF088738:441 AF088787:441 AF088791:441 D50751:442 AF088695:442 AF088758:442 D21848:442 AF088772:443 AF088795:443
|nearest_unigene=Hs.449281
|nearest_unigene=Hs.449281
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000390416.1
|transcript_name=ENST00000390416.1 LP896471 L77708 KM004774 M28598 D50773
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_101436.1
|tss_id=rfhg_101436.1

Revision as of 15:51, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_101436.1
Species:human
Chr:chr7
Start:142796989
End:142797021
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D4041353,EH38E2597734)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000390416.1:0
LP896471:0
L77708:0
KM004774:0
M28598:0
D50773:0
GeneID:
HGNC/MGI_ID:HGNC:12172
UniProt_ID:A0A5H1ZRR5
Nearer transcript ids and distances:
  • X04923:-19
  • Z48302:-48
  • AB076754:99
  • AB076755:99
  • AF117135:100
  • D32023:100
  • AF088736:100
  • AB076771:101
  • AB076799:101
  • AF088701:101
  • KM004327:102
  • D32018:103
  • AF395792:103
  • D50747:103
  • AF088778:103
  • D50764:103
  • FJ571144:103
  • AF088700:104
  • AF088759:105
  • AF088680:107
  • KM004770:108
  • AF327021:-127
  • M12424:-129
  • AF045804:-133
  • AJ305364:-133
  • AB076773:-136
  • AF045808:-136
  • AJ305361:-136
  • Z77836:-136
  • AF088767:-137
  • AF045807:-137
  • AJ305360:-137
  • JQ778260:-137
  • D32019:-138
  • D50743:-138
  • AF179357:-140
  • D32038:-140
  • AF088702:-140
  • AB076761:-141
  • AB076794:-141
  • AF088703:-141
  • AF045802:-141
  • AJ305362:-141
  • D50769:-142
  • JQ778264:-142
  • X01410:-150
  • AF088780:201
  • AB076757:218
  • AB076788:218
  • AB076789:218
  • AB076791:219
  • D50767:219
  • AB076765:220
  • AB076792:221
  • M28597:221
  • AF088742:221
  • LT626065:-310
  • L77713:-419
  • AF088749:-419
  • KM004279:-420
  • AB076785:-424
  • D50755:-424
  • AB044123:-425
  • AB076767:-425
  • AB076782:-425
  • L77728:-425
  • AF088705:-425
  • D50762:-425
  • AF088730:-427
  • AF088726:-428
  • AB044117:-430
  • AB076752:-430
  • D50744:-431
  • AB044135:433
  • AF088694:434
  • AF088699:435
  • AF088748:435
  • AF117139:436
  • D50742:436
  • AF088766:436
  • AB044113:437
  • AB076759:437
  • L77720:437
  • L77724:437
  • S80931:437
  • D50746:437
  • AF088740:437
  • U07134:438
  • D50745:438
  • AF088698:438
  • AF088755:438
  • AF088776:438
  • AF088797:438
  • D50763:438
  • M12426:438
  • D50752:439
  • AF088697:439
  • AF088746:439
  • AF088764:439
  • D50748:440
  • AF088719:440
  • AF088733:440
  • AF088744:440
  • AF088745:440
  • AF088774:440
  • D50772:440
  • AF088696:441
  • AF088738:441
  • AF088787:441
  • AF088791:441
  • D50751:442
  • AF088695:442
  • AF088758:442
  • D21848:442
  • AF088772:443
  • AF088795:443
view more...
Gene_name:PRSS2
Gene_symbol:TRBJ2-4
Gene_synonyms:TCRBJ2S4 TRBJ24
Gene_source:HGNC:12172



TATA-Box annotation

Distance to TSS:26035
Nearest PromoterID:NM_002770
Entrez ID:5645
Nearest Unigene:Hs.449281
Nearest Refseq:NM_002770
Nearest Ensembl:ENSG00000275896
Gene Name:PRSS2
Gene Alias:TRY2|TRY8|TRYP2
Gene Type:protein-coding
CpG%:0.031250
GC%:0.515152
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "X04923:-19 Z48302:-48 AB076754:99 AB076755:99 AF117135:100 D32023:100 AF088736:100 AB076771:101 AB076799:101 AF088701:101 KM004327:102 D32018:103 AF395792:103 D50747:103 AF088778:103 D50764:103 FJ571144:103 AF088700:104 AF088759:105 AF088680:107 KM004770:108 AF327021:-127 M12424:-129 AF045804:-133 AJ305364:-133 AB076773:-136 AF045808:-136 AJ305361:-136 Z77836:-136 AF088767:-137 AF045807:-137 AJ305360:-137 JQ778260:-137 D32019:-138 D50743:-138 AF179357:-140 D32038:-140 AF088702:-140 AB076761:-141 AB076794:-141 AF088703:-141 AF045802:-141 AJ305362:-141 D50769:-142 JQ778264:-142 X01410:-150 AF088780:201 AB076757:218 AB076788:218 AB076789:218 AB076791:219 D50767:219 AB076765:220 AB076792:221 M28597:221 AF088742:221 LT626065:-310 L77713:-419 AF088749:-419 KM004279:-420 AB076785:-424 D50755:-424 AB044123:-425 AB076767:-425 AB076782:-425 L77728:-425 AF088705:-425 D50762:-425 AF088730:-427 AF088726:-428 AB044117:-430 AB076752:-430 D50744:-431 AB044135:433 AF088694:434 AF088699:435 AF088748:435 AF117139:436 D50742:436 AF088766:436 AB044113:437 AB076759:437 L77720:437 L77724:437 S80931:437 D50746:437 AF088740:437 U07134:438 D50745:438 AF088698:438 AF088755:438 AF088776:438 AF088797:438 D50763:438 M12426:438 D50752:439 AF088697:439 AF088746:439 AF088764:439 D50748:440 AF088719:440 AF088733:440 AF088744:440 AF088745:440 AF088774:440 D50772:440 AF088696:441 AF088738:441 AF088787:441 AF088791:441 D50751:442 AF088695:442 AF088758:442 D21848:442 AF088772:443 AF088795:443" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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