TSS: Rfhg 102195.1: Difference between revisions

Revision as of 16:22, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_102195.1
Species:	human
Chr:	chr7

Start:	151114556
End:	151114566
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4046929,EH38E2601221)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001308305.2:72
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000335367.7:112 BC044644:112 EU831533:204 EU831441:204 view more...

Gene_name:	AGAP3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-77
Nearest PromoterID:	NM_001308305
Entrez ID:	116988
Nearest Unigene:	Hs.647075
Nearest Refseq:	NM_031946
Nearest Ensembl:	ENSG00000133612
Gene Name:	AGAP3
Gene Alias:	AGAP-3\|CENTG3\|CRAG\|MRIP-1\|cnt-g3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.545455
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001308305.2:72 ENST00000335367.7:112 BC044644:112 EU831533:204 EU831441:204
 |annotation=promoter-TSS (NM_001308305)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001308305
 |nearest_refseq=NM_031946
+|nearest_transcripts=ENST00000335367.7:112 BC044644:112 EU831533:204 EU831441:204
 |nearest_unigene=Hs.647075
 |peak_score=1