TSS: Rfhg 102914.1: Difference between revisions

Revision as of 16:49, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_102914.1
Species:	human
Chr:	chr8

Start:	1763232
End:	1763283
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4055319,EH38E2606485)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000665209.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000518481.1:-14 NR_134302.1:-51 view more...

Gene_name:	LOC101927752
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	77
Nearest PromoterID:	NR_134302
Entrez ID:	101927752
Nearest Unigene:	Hs.356690
Nearest Refseq:	NR_134302
Nearest Ensembl:	ENSG00000253982
Gene Name:	LOC101927752
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.098039
GC%:	0.730769
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000665209.1:0 ENST00000518481.1:-14 NR_134302.1:-51
 |annotation=promoter-TSS (NM_018941)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_134302
 |nearest_refseq=NR_134302
+|nearest_transcripts=ENST00000518481.1:-14 NR_134302.1:-51
 |nearest_unigene=Hs.356690
 |peak_score=1