TSS: Rfhg 104060.1: Difference between revisions

Revision as of 17:38, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_104060.1
Species:	human
Chr:	chr8

Start:	19511177
End:	19511190
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D4067993,EH38E2614606)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CSGALNACT1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	91362
Nearest PromoterID:	NM_001354498
Entrez ID:	55790
Nearest Unigene:	Hs.613729
Nearest Refseq:	NM_018371
Nearest Ensembl:	ENSG00000147408
Gene Name:	CSGALNACT1
Gene Alias:	CSGalNAcT-1\|ChGn\|ChGn-1\|beta4GalNAcT
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.357143
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001354497, intron 1 of 7)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001354498
 |nearest_refseq=NM_018371
+|nearest_transcripts=
 |nearest_unigene=Hs.613729
 |peak_score=1