TSS: Rfhg 104906.1: Difference between revisions

Revision as of 18:19, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_104906.1
Species:	human
Chr:	chr8

Start:	26293672
End:	26293694
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D4074185,EH38E2618890)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF335041:0 MA570618:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	CU691948:-9 AB385112:-9 HM005469:-9 ENST00000521484.5:-82 ENST00000519439.5:-100 ENST00000521557.5:-189 ENST00000522482.5:-455 ENST00000519636.5:-456 ENST00000315985.7:-456 NM_001177591.2:-456 AK303981:-456 LF385007:-456 MA620584:-456 ENST00000524099.5:-466 view more...

Gene_name:	PPP2R2A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	467
Nearest PromoterID:	NM_001177591
Entrez ID:	5520
Nearest Unigene:	Hs.146339
Nearest Refseq:	NM_002717
Nearest Ensembl:	ENSG00000221914
Gene Name:	PPP2R2A
Gene Alias:	B55A\|B55ALPHA\|PR52A\|PR55A\|PR55alpha
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.478261
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "CU691948:-9 AB385112:-9 HM005469:-9 ENST00000521484.5:-82 ENST00000519439.5:-100 ENST00000521557.5:-189 ENST00000522482.5:-455 ENST00000519636.5:-456 ENST00000315985.7:-456 NM_001177591.2:-456 AK303981:-456 LF385007:-456 MA620584:-456 ENST00000524099.5:-466" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF335041:0 MA570618:0 CU691948:-9 AB385112:-9 HM005469:-9 ENST00000521484.5:-82 ENST00000519439.5:-100 ENST00000521557.5:-189 ENST00000522482.5:-455 ENST00000519636.5:-456 ENST00000315985.7:-456 NM_001177591.2:-456 AK303981:-456 LF385007:-456 MA620584:-456 ENST00000524099.5:-466
 |annotation=exon (NM_002717, exon 2 of 10)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001177591
 |nearest_refseq=NM_002717
+|nearest_transcripts=CU691948:-9 AB385112:-9 HM005469:-9 ENST00000521484.5:-82 ENST00000519439.5:-100 ENST00000521557.5:-189 ENST00000522482.5:-455 ENST00000519636.5:-456 ENST00000315985.7:-456 NM_001177591.2:-456 AK303981:-456 LF385007:-456 MA620584:-456 ENST00000524099.5:-466
 |nearest_unigene=Hs.146339
 |peak_score=1