TSS: Rfhg 106145.1: Difference between revisions

Revision as of 19:12, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_106145.1
Species:	human
Chr:	chr8

Start:	42051118
End:	42051134
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4087005,EH38E2627651)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC105379393
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-624
Nearest PromoterID:	NR_136589
Entrez ID:	105379393
Nearest Unigene:	Hs.742878
Nearest Refseq:	NR_136589
Nearest Ensembl:
Gene Name:	LOC105379393
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.062500
GC%:	0.529412
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NR_136589)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_136589
 |nearest_refseq=NR_136589
+|nearest_transcripts=
 |nearest_unigene=Hs.742878
 |peak_score=1