TSS: Rfhg 106555.1: Difference between revisions

Revision as of 19:29, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_106555.1
Species:	human
Chr:	chr8

Start:	52249478
End:	52249498
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D4092017,EH38E2630803)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001352875.2:0 NM_001352878.2:0 NM_001352853.2:0 NM_001352855.2:0 NM_001352854.2:0 NM_001352851.2:0 NM_001352868.2:0 NM_001352852.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000518545.5:66

Gene_name:	ST18
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	9
Nearest PromoterID:	NM_001352854
Entrez ID:	9705
Nearest Unigene:	Hs.655499
Nearest Refseq:	NM_014682
Nearest Ensembl:	ENSG00000147488
Gene Name:	ST18
Gene Alias:	NZF-3\|NZF3\|ZC2H2C3\|ZC2HC10\|ZNF387
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001352875.2:0 NM_001352878.2:0 NM_001352853.2:0 NM_001352855.2:0 NM_001352854.2:0 NM_001352851.2:0 NM_001352868.2:0 NM_001352852.2:0 ENST00000518545.5:66
 |annotation=promoter-TSS (NM_001352856)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001352854
 |nearest_refseq=NM_014682
+|nearest_transcripts=ENST00000518545.5:66
 |nearest_unigene=Hs.655499
 |peak_score=1