TSS: Rfhg 10779.1: Difference between revisions

Revision as of 20:21, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_10779.1
Species:	human
Chr:	chr1

Start:	111229729
End:	111229748
Strand:	+

Source datasets

FANTOM5|EPD|ENCODE

Protocol

CAGE|TSS_database

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2210636,EH38E1376214)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001025199.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000467038.6:5 ENST00000497587.6:9 U58515:-18 ENST00000477185.6:-23 ENST00000526684.1:30 ENST00000466741.5:-37 ENST00000530597.1:40 ENST00000524472.5:72 AK298466:72 AK223316:84 view more...

Gene_name:	CHI3L2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2
Nearest PromoterID:	NM_001025199
Entrez ID:	1117
Nearest Unigene:	Hs.514840
Nearest Refseq:	NM_004000
Nearest Ensembl:	ENSG00000064886
Gene Name:	CHI3L2
Gene Alias:	CHIL2\|YKL-39\|YKL39
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001025199.2:0 ENST00000467038.6:5 ENST00000497587.6:9 U58515:-18 ENST00000477185.6:-23 ENST00000526684.1:30 ENST00000466741.5:-37 ENST00000530597.1:40 ENST00000524472.5:72 AK298466:72 AK223316:84
 |annotation=promoter-TSS (NM_001025199)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001025199
 |nearest_refseq=NM_004000
+|nearest_transcripts=ENST00000467038.6:5 ENST00000497587.6:9 U58515:-18 ENST00000477185.6:-23 ENST00000526684.1:30 ENST00000466741.5:-37 ENST00000530597.1:40 ENST00000524472.5:72 AK298466:72 AK223316:84
 |nearest_unigene=Hs.514840
 |peak_score=1