TSS: Rfhg 108242.1: Difference between revisions

Revision as of 20:40, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_108242.1
Species:	human
Chr:	chr8

Start:	81440513
End:	81440522
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	DNase-H3K4me3 (EH38D4112866,EH38E2643881)
Category:	DNase-H3K4me3

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PMP2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	6922
Nearest PromoterID:	NM_002677
Entrez ID:	5375
Nearest Unigene:	Hs.571512
Nearest Refseq:	NM_002677
Nearest Ensembl:	ENSG00000147588
Gene Name:	PMP2
Gene Alias:	CMT1G\|FABP8\|M-FABP\|MP2\|P2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=3' UTR (NM_001348381, exon 3 of 3)
 |ccre_category=DNase-H3K4me3
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_002677
 |nearest_refseq=NM_002677
+|nearest_transcripts=
 |nearest_unigene=Hs.571512
 |peak_score=1