TSS: Rfhg 108780.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000517506.2:0 ENST00000481490.3:0 NM_001205263.2:0 NM_001256141.2:0 AF007866:24 AK307516:303 | |||
|annotation=promoter-TSS (NM_001256141) | |annotation=promoter-TSS (NM_001256141) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_001256141 | |nearest_promoter_id=NM_001256141 | ||
|nearest_refseq=NM_001256141 | |nearest_refseq=NM_001256141 | ||
|nearest_transcripts=AF007866:24 AK307516:303 | |||
|nearest_unigene=Hs.30561 | |nearest_unigene=Hs.30561 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000517506.2 ENST00000481490.3 | |transcript_name=ENST00000517506.2 ENST00000481490.3 NM_001205263.2 NM_001256141.2 | ||
|tss_cluster_detected=5 | |tss_cluster_detected=5 | ||
|tss_id=rfhg_108780.1 | |tss_id=rfhg_108780.1 | ||
Revision as of 21:06, 6 November 2024
Basic information about the TSS
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| Source datasets | PRJNA615891|PRJNA401781|PRJNA548673 | |||||||||||||
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| Protocol | SLIC_CAGE|TIF-seq2|CAGE|oligo_capping | |||||||||||||
| TSS cluster detected* | 5 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4121136,EH38E2648455) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001256141 |
| Entrez ID: | 100861412 |
| Nearest Unigene: | Hs.30561 |
| Nearest Refseq: | NM_001256141 |
| Nearest Ensembl: | ENSG00000265817 |
| Gene Name: | FSBP |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.393939 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.