TSS: Rfhg 109574.1: Difference between revisions

Revision as of 21:40, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_109574.1
Species:	human
Chr:	chr8

Start:	103139015
End:	103139034
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4128944,EH38E2654189)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	BAALC
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1701
Nearest PromoterID:	NM_001024372
Entrez ID:	79870
Nearest Unigene:	Hs.533446
Nearest Refseq:	NM_024812
Nearest Ensembl:	ENSG00000164929
Gene Name:	BAALC
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.052632
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NR_145429, intron 4 of 5)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001024372
 |nearest_refseq=NM_024812
+|nearest_transcripts=
 |nearest_unigene=Hs.533446
 |peak_score=1