TSS: Rfhg 110466.1: Difference between revisions

Revision as of 22:19, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_110466.1
Species:	human
Chr:	chr8

Start:	123613933
End:	123613933
Strand:	+

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4143460,EH38E2662999)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000652905.1:286
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000518633.5:292 ENST00000524355.1:292 view more...

Gene_name:	KLHL38
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	39868
Nearest PromoterID:	NM_001081675
Entrez ID:	340359
Nearest Unigene:	Hs.450252
Nearest Refseq:	NM_001081675
Nearest Ensembl:	ENSG00000175946
Gene Name:	KLHL38
Gene Alias:	C8ORFK36
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000652905.1:286 ENST00000518633.5:292 ENST00000524355.1:292
 |annotation=Intergenic
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001081675
 |nearest_refseq=NM_001081675
+|nearest_transcripts=ENST00000518633.5:292 ENST00000524355.1:292
 |nearest_unigene=Hs.450252
 |peak_score=1