TSS: Rfhg 112144.1: Difference between revisions

Revision as of 23:24, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_112144.1
Species:	human
Chr:	chr8

Start:	141431160
End:	141431177
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D4159281,EH38E2673886)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PTP4A3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	9780
Nearest PromoterID:	NM_007079
Entrez ID:	11156
Nearest Unigene:	Hs.43666
Nearest Refseq:	NM_007079
Nearest Ensembl:	ENSG00000184489
Gene Name:	PTP4A3
Gene Alias:	PRL-3\|PRL-R\|PRL3
Gene Type:	protein-coding
CpG%:	0.058824
GC%:	0.555556
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=3' UTR (NM_007079, exon 4 of 4).2
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_007079
 |nearest_refseq=NM_007079
+|nearest_transcripts=
 |nearest_unigene=Hs.43666
 |peak_score=1