TSS: Rfhg 114316.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000379883.3:0 ENST00000379868.6:0 ENST00000679771.1:0 ENST00000680733.1:0 ENST00000679859.1:0 NM_001385910.1:0 NM_001385914.1:0 NM_014314.4:0 NM_001385909.1:0 NM_001385907.1:0 NM_001385913.1:0 NM_001385912.1:0 BC070029:0 AK315040:0 AK301678:0 BX647917:0 BC132786:-9 BC136610:-9 AB385150:20 ENST00000680883.1:23 ENST00000679662.1:23 LF383856:-61 MA619433:-61 AF038963:-61 LQ878892:-61 BC107731:-80
|annotation=promoter-TSS (NM_014314)
|annotation=promoter-TSS (NM_014314)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_014314
|nearest_promoter_id=NM_014314
|nearest_refseq=NM_014314
|nearest_refseq=NM_014314
|nearest_transcripts=BC132786:-9 BC136610:-9 AB385150:20 ENST00000680883.1:23 ENST00000679662.1:23 LF383856:-61 MA619433:-61 AF038963:-61 LQ878892:-61 BC107731:-80
|nearest_unigene=Hs.190622
|nearest_unigene=Hs.190622
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=34(CGGCTTTAAAGC,-,0.00)
|tata_box=34(CGGCTTTAAAGC,-,0.00)
|transcript_name=ENST00000379883.3 ENST00000379868.6 ENST00000679771.1 ENST00000680733.1 ENST00000679859.1 BC070029 AK315040 AK301678 BX647917
|transcript_name=ENST00000379883.3 ENST00000379868.6 ENST00000679771.1 ENST00000680733.1 ENST00000679859.1 NM_001385910.1 NM_001385914.1 NM_014314.4 NM_001385909.1 NM_001385907.1 NM_001385913.1 NM_001385912.1 BC070029 AK315040 AK301678 BX647917
|tss_cluster_detected=2
|tss_cluster_detected=2
|tss_id=rfhg_114316.1
|tss_id=rfhg_114316.1

Revision as of 01:01, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_114316.1
Species:human
Chr:chr9
Start:32526187
End:32526263
Strand:-
Source datasetsPRJNA4843412|DRA013844
ProtocolNETCAGE|CAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4185364,EH38E2690005)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000379883.3:0
ENST00000379868.6:0
ENST00000679771.1:0
ENST00000680733.1:0
ENST00000679859.1:0
NM_001385910.1:0
NM_001385914.1:0
NM_014314.4:0
NM_001385909.1:0
NM_001385907.1:0
NM_001385913.1:0
NM_001385912.1:0
BC070029:0
AK315040:0
AK301678:0
BX647917:0
GeneID:23586
HGNC/MGI_ID:HGNC:19102
UniProt_ID:A2A376 B4DWT9 O95786
Nearer transcript ids and distances:
  • BC132786:-9
  • BC136610:-9
  • AB385150:20
  • ENST00000680883.1:23
  • ENST00000679662.1:23
  • LF383856:-61
  • MA619433:-61
  • AF038963:-61
  • LQ878892:-61
  • BC107731:-80
view more...
Gene_name:DDX58
Gene_symbol:RIGI
Gene_synonyms:DKFZp434J1111 FLJ13599 RIG-1 RIG-I RIG1
Gene_source:HGNC:19102



TATA-Box annotation

Distance to TSS:-29
Nearest PromoterID:NM_014314
Entrez ID:23586
Nearest Unigene:Hs.190622
Nearest Refseq:NM_014314
Nearest Ensembl:ENSG00000107201
Gene Name:DDX58
Gene Alias:RIG-I|RIG1|RIGI|RLR-1|SGMRT2
Gene Type:protein-coding
CpG%:0.078947
GC%:0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):34(CGGCTTTAAAGC,-,0.00)



TSS expression

Expression data not found.
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