TSS: Rfhg 114317.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF383856:0 MA619433:0 AF038963:0 LQ878892:0 BC107731:0 BC132786:30 BC136610:30 ENST00000679771.1:94 BC070029:94 ENST00000379883.3:106 ENST00000379868.6:106 ENST00000680733.1:106 ENST00000679859.1:106 NM_001385910.1:106 NM_001385914.1:106 NM_014314.4:106 NM_001385909.1:106 NM_001385907.1:106 NM_001385913.1:106 NM_001385912.1:106 BX647917:106 AK315040:107 AK301678:107 AB385150:135 ENST00000680883.1:138 ENST00000679662.1:138
|annotation=promoter-TSS (NM_014314)
|annotation=promoter-TSS (NM_014314)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_014314
|nearest_promoter_id=NM_014314
|nearest_refseq=NM_014314
|nearest_refseq=NM_014314
|nearest_transcripts=BC132786:30 BC136610:30 ENST00000679771.1:94 BC070029:94 ENST00000379883.3:106 ENST00000379868.6:106 ENST00000680733.1:106 ENST00000679859.1:106 NM_001385910.1:106 NM_001385914.1:106 NM_014314.4:106 NM_001385909.1:106 NM_001385907.1:106 NM_001385913.1:106 NM_001385912.1:106 BX647917:106 AK315040:107 AK301678:107 AB385150:135 ENST00000680883.1:138 ENST00000679662.1:138
|nearest_unigene=Hs.190622
|nearest_unigene=Hs.190622
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=AF038963 BC107731
|transcript_name=LF383856 MA619433 AF038963 LQ878892 BC107731
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_114317.1
|tss_id=rfhg_114317.1

Revision as of 01:01, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_114317.1
Species:human
Chr:chr9
Start:32526302
End:32526348
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4185364,EH38E2690005)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF383856:0
MA619433:0
AF038963:0
LQ878892:0
BC107731:0
GeneID:23586
HGNC/MGI_ID:HGNC:19102
UniProt_ID:Q3B797
Nearer transcript ids and distances:
  • BC132786:30
  • BC136610:30
  • ENST00000679771.1:94
  • BC070029:94
  • ENST00000379883.3:106
  • ENST00000379868.6:106
  • ENST00000680733.1:106
  • ENST00000679859.1:106
  • NM_001385910.1:106
  • NM_001385914.1:106
  • NM_014314.4:106
  • NM_001385909.1:106
  • NM_001385907.1:106
  • NM_001385913.1:106
  • NM_001385912.1:106
  • BX647917:106
  • AK315040:107
  • AK301678:107
  • AB385150:135
  • ENST00000680883.1:138
  • ENST00000679662.1:138
view more...
Gene_name:DDX58
Gene_symbol:RIGI
Gene_synonyms:DKFZp434J1111 FLJ13599 RIG-1 RIG-I RIG1
Gene_source:HGNC:19102



TATA-Box annotation

Distance to TSS:-129
Nearest PromoterID:NM_014314
Entrez ID:23586
Nearest Unigene:Hs.190622
Nearest Refseq:NM_014314
Nearest Ensembl:ENSG00000107201
Gene Name:DDX58
Gene Alias:RIG-I|RIG1|RIGI|RLR-1|SGMRT2
Gene Type:protein-coding
CpG%:0.021739
GC%:0.340426
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "BC132786:30 BC136610:30 ENST00000679771.1:94 BC070029:94 ENST00000379883.3:106 ENST00000379868.6:106 ENST00000680733.1:106 ENST00000679859.1:106 NM_001385910.1:106 NM_001385914.1:106 NM_014314.4:106 NM_001385909.1:106 NM_001385907.1:106 NM_001385913.1:106 NM_001385912.1:106 BX647917:106 AK315040:107 AK301678:107 AB385150:135 ENST00000680883.1:138 ENST00000679662.1:138" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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