TSS: Rfhg 114328.1: Difference between revisions

Revision as of 01:02, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_114328.1
Species:	human
Chr:	chr9

Start:	32573065
End:	32573067
Strand:	-

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4185401,EH38E2690035)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KJ891678:4
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	CR456920:5 AF035840:-61 BC029247:-62 AK289702:-71 AF067167:-88 BC016708:-89 ENST00000379847.8:-92 ENST00000350021.2:-92 NM_002493.5:-92 NM_182739.3:-92 NM_001199987.2:-92 BC009801:-92 ENST00000366466.5:-117 view more...

Gene_name:	NDUFB6
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	93
Nearest PromoterID:	NM_182739
Entrez ID:	4712
Nearest Unigene:	Hs.493668
Nearest Refseq:	NM_002493
Nearest Ensembl:	ENSG00000165264
Gene Name:	NDUFB6
Gene Alias:	B17\|CI
Gene Type:	protein-coding
CpG%:	0.500000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=KJ891678:4 CR456920:5 AF035840:-61 BC029247:-62 AK289702:-71 AF067167:-88 BC016708:-89 ENST00000379847.8:-92 ENST00000350021.2:-92 NM_002493.5:-92 NM_182739.3:-92 NM_001199987.2:-92 BC009801:-92 ENST00000366466.5:-117
 |annotation=promoter-TSS (NM_002493)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_182739
 |nearest_refseq=NM_002493
+|nearest_transcripts=CR456920:5 AF035840:-61 BC029247:-62 AK289702:-71 AF067167:-88 BC016708:-89 ENST00000379847.8:-92 ENST00000350021.2:-92 NM_002493.5:-92 NM_182739.3:-92 NM_001199987.2:-92 BC009801:-92 ENST00000366466.5:-117
 |nearest_unigene=Hs.493668
 |peak_score=1