TSS: Rfhg 114673.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000354479.5:0 ENST00000421362.6:0 NM_001040411.3:0 NM_001040412.3:0 ENST00000534880.1:47 ENST00000537671.1:55
|annotation=promoter-TSS (NM_001040411)
|annotation=promoter-TSS (NM_001040411)
|ccre_category=N
|ccre_category=N
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|nearest_promoter_id=NM_001040411
|nearest_promoter_id=NM_001040411
|nearest_refseq=NM_203299
|nearest_refseq=NM_203299
|nearest_transcripts=ENST00000534880.1:47 ENST00000537671.1:55
|nearest_unigene=Hs.148250
|nearest_unigene=Hs.148250
|peak_score=1
|peak_score=1
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|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000354479.5 ENST00000421362.6
|transcript_name=ENST00000354479.5 ENST00000421362.6 NM_001040411.3 NM_001040412.3
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_114673.1
|tss_id=rfhg_114673.1

Revision as of 01:19, 7 November 2024

Basic information about the TSS


TSS ID:rfhg_114673.1
Species:human
Chr:chr9
Start:35041095
End:35041095
Strand:+
Source datasetsEPD
ProtocolTSS_database
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000354479.5:0
ENST00000421362.6:0
NM_001040411.3:0
NM_001040412.3:0
GeneID:138724
HGNC/MGI_ID:HGNC:31418
UniProt_ID:Q5VYM1
Nearer transcript ids and distances:
  • ENST00000534880.1:47
  • ENST00000537671.1:55
view more...
Gene_name:C9orf131
Gene_symbol:C9orf131
Gene_synonyms:MGC41945
Gene_source:HGNC:31418



TATA-Box annotation


Distance to TSS:0
Nearest PromoterID:NM_001040411
Entrez ID:138724
Nearest Unigene:Hs.148250
Nearest Refseq:NM_203299
Nearest Ensembl:ENSG00000174038
Gene Name:C9orf131
Gene Alias:-
Gene Type:protein-coding
CpG%:0.000000
GC%:0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.