TSS: Rfhg 114692.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000378617.4:0 ENST00000361778.6:0 ENST00000465745.6:0 ENST00000492770.1:0 NM_001201484.2:0 NM_032634.4:0 NM_152850.4:0 AK074064:0 ENST00000474436.1:8 AK090433:8 AL833956:10 LF206427:-111 MA442004:-111 ENST00000472208.1:304 ENST00000298004.9:338 BC065282:338
|annotation=promoter-TSS (NM_152850)
|annotation=promoter-TSS (NM_152850)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_152850
|nearest_promoter_id=NM_152850
|nearest_refseq=NM_032634
|nearest_refseq=NM_032634
|nearest_transcripts=ENST00000474436.1:8 AK090433:8 AL833956:10 LF206427:-111 MA442004:-111 ENST00000472208.1:304 ENST00000298004.9:338 BC065282:338
|nearest_unigene=Hs.522099
|nearest_unigene=Hs.522099
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000378617.4 ENST00000361778.6 ENST00000465745.6 ENST00000492770.1 AK074064
|transcript_name=ENST00000378617.4 ENST00000361778.6 ENST00000465745.6 ENST00000492770.1 NM_001201484.2 NM_032634.4 NM_152850.4 AK074064
|tss_cluster_detected=8
|tss_cluster_detected=8
|tss_id=rfhg_114692.1
|tss_id=rfhg_114692.1

Revision as of 01:20, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_114692.1
Species:human
Chr:chr9
Start:35096558
End:35096640
Strand:-
Source datasetsPRJNA4843412|DRA013844|PRJNA401781|PRJNA615891|PRJNA548673
|PRJDB5282
ProtocolNETCAGE|CAGE|RAMPAGE|SLIC_CAGE|ReCappable-seq|C1CAGE
TSS cluster detected*8

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4187535,EH38E2691576)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000378617.4:0
ENST00000361778.6:0
ENST00000465745.6:0
ENST00000492770.1:0
NM_001201484.2:0
NM_032634.4:0
NM_152850.4:0
AK074064:0
GeneID:84720
HGNC/MGI_ID:HGNC:23215
UniProt_ID:Q8TEQ8
Nearer transcript ids and distances:
  • ENST00000474436.1:8
  • AK090433:8
  • AL833956:10
  • LF206427:-111
  • MA442004:-111
  • ENST00000472208.1:304
  • ENST00000298004.9:338
  • BC065282:338
view more...
Gene_name:PIGO
Gene_symbol:PIGO
Gene_synonyms:DKFZp434M222 FLJ00135 PIG-O
Gene_source:HGNC:23215



TATA-Box annotation

Distance to TSS:2
Nearest PromoterID:NM_152850
Entrez ID:84720
Nearest Unigene:Hs.522099
Nearest Refseq:NM_032634
Nearest Ensembl:ENSG00000165282
Gene Name:PIGO
Gene Alias:HPMRS2
Gene Type:protein-coding
CpG%:0.109756
GC%:0.710843
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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