TSS: Rfhg 11479.1: Difference between revisions

Revision as of 01:24, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_11479.1
Species:	human
Chr:	chr1

Start:	119327156
End:	119327177
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2217746,EH38E1381324)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000655614.1:-39
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000660871.1:-80 ENST00000457719.1:-126 view more...

Gene_name:	LINC01780
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1086
Nearest PromoterID:	NR_146623
Entrez ID:	105378934
Nearest Unigene:
Nearest Refseq:	NR_146623
Nearest Ensembl:	ENSG00000232650
Gene Name:	LINC01780
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.047619
GC%:	0.363636
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000655614.1:-39 ENST00000660871.1:-80 ENST00000457719.1:-126
 |annotation=Intergenic
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_146623
 |nearest_refseq=NR_146623
+|nearest_transcripts=ENST00000660871.1:-80 ENST00000457719.1:-126
 |nearest_unigene=
 |peak_score=1