TSS: Rfhg 115576.1: Difference between revisions

Revision as of 01:53, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_115576.1
Species:	human
Chr:	chr9

Start:	72365450
End:	72365460
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4195240,EH38E2696747)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF211276:-192 MA446853:-192
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000376960.8:215 ENST00000376962.10:242 NM_001102420.3:242 NM_001102421.3:242 NM_006007.4:242 BC027707:253 BC011018:367 ENST00000487330.1:474 AF062346:479 LF345150:487 MA580727:487 view more...

Gene_name:	ZFAND5
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-247
Nearest PromoterID:	NM_001102420
Entrez ID:	7763
Nearest Unigene:	Hs.406096
Nearest Refseq:	NM_006007
Nearest Ensembl:	ENSG00000107372
Gene Name:	ZFAND5
Gene Alias:	ZA20D2\|ZFAND5A\|ZNF216
Gene Type:	protein-coding
CpG%:	0.100000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF211276:-192 MA446853:-192 ENST00000376960.8:215 ENST00000376962.10:242 NM_001102420.3:242 NM_001102421.3:242 NM_006007.4:242 BC027707:253 BC011018:367 ENST00000487330.1:474 AF062346:479 LF345150:487 MA580727:487
 |annotation=promoter-TSS (NM_001278244)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001102420
 |nearest_refseq=NM_006007
+|nearest_transcripts=ENST00000376960.8:215 ENST00000376962.10:242 NM_001102420.3:242 NM_001102421.3:242 NM_006007.4:242 BC027707:253 BC011018:367 ENST00000487330.1:474 AF062346:479 LF345150:487 MA580727:487
 |nearest_unigene=Hs.406096
 |peak_score=1